benjjneb / dada2
git clone https://github.com/benjjneb/dada2.git
v1.26 · 3y ago
🔥 on GitHub Trending today
R package that infers exact amplicon sequence variants from Illumina marker-gene reads, resolving differences of a single nucleotide.
Why you might care
Built for microbiome researchers who want exact sequence variants instead of OTU clustering at 97% identity. It is distributed through Bioconductor and integrates with standard R-based microbiome analysis workflows.
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forks · 215 open issues
Star history (as recorded here)
LanguageR
LicenseLGPL-3.0
Created2014-12-17 (11y ago)
Last push2mo ago
Watchers37
OwnerUser
Seen on GitHub Trending
- 2026-10-24 — #10 daily in r
- 2026-10-23 — #3 daily in r
- 2026-10-22 — #6 daily in r
- 2026-10-21 — #5 daily in r
- 2026-10-20 — #5 daily in r
GitHub topics
Links
- GitHub: github.com/benjjneb/dada2
- Homepage: http://benjjneb.github.io/dada2/
- Releases · Issues · Hacker News mentions
README
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