soedinglab / MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

scikit-bio / scikit-bio

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

torognes / vsearch

Versatile open-source tool for microbiome analysis

Ecogenomics / GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

benjjneb / dada2

Accurate sample inference from amplicon data with single nucleotide resolution

merenlab / anvio

An analysis and visualization platform for 'omics data

styczynski / bioseqdb

Genomic sequence storage, indexing and alignment inside PostgreSQL: https://bioseqdb.com/