joey711 / phyloseq
git clone https://github.com/joey711/phyloseq.git
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R package of classes and tools for importing, storing, analyzing, and sharing phylogenetic microbiome sequencing data.
Why you might care
Provides a single object model that keeps OTU tables, sample metadata, taxonomy, and phylogenetic trees together for microbiome census analysis. Published in PLoS ONE and distributed via Bioconductor, it supports reproducible interactive analysis and graphics, and includes a Shiny web app for interactive use.
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Star history starts 2026-10-29; the chart appears after the second daily snapshot.
LanguageR
License—
Created2011-08-11 (15y ago)
Last push8mo ago
Watchers52
OwnerUser
Seen on GitHub Trending
- 2026-10-29 — #1 daily in r
Links
- GitHub: github.com/joey711/phyloseq
- Homepage: http://joey711.github.io/phyloseq/
- Releases · Issues · Hacker News mentions
README
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Blurb generated by claude-haiku-5-5 today. Star deltas marked ~ are extrapolated from partial history.