K-Dense-AI / scientific-agent-skills
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 250,000+ scientists worldwide. 177 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
Developer-Y / cs-video-courses
List of Computer Science courses with video lectures.
ssinder / bioinformatics-agent-skills
Agent Skills for computational biology — RNA-seq, single-cell, protein structure, molecular dynamics, peptide design, literature mining and publication figures. Turn any AI coding agent into a computational biology assistant.
synthetic-sciences / openscience
The open-source AI workbench for scientific research
vioIetMiku / miku-gate
将VPN Gate 公益家宽挂载到vps，实现一机多家宽出口的效果，端口隔离 节点互不影响 支持链式代理 导入指纹浏览器
heise3 / ExtremaRank
Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk
studioigor / ref2game
Turns a single reference image into a playable 2D browser game prototype, with AI-generated art and code-driven animation.
elioinvest / Crew
Crew 是一款基于Claude、Codex Cli 的桌面软件，减少封号风险，同时，提高AI变成的可用性
mampfes / hacs_waste_collection_schedule
Home Assistant integration framework for (garbage collection) schedules
danielecook / Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
K-Dense-AI / k-dense-byok
An AI co-scientist running on your desktop. Claude Science but better.
ai4s-research / awesome-ai-for-science
A curated list of awesome AI tools, libraries, papers, datasets, and frameworks that accelerate scientific discovery — from physics and chemistry to biology, materials, and beyond.
scverse / scanpy
Single-cell analysis in Python. Scales to >100M cells.
poplarity / GelFigure
Turn a raw agarose gel image into a publication-ready figure in the browser. Offline, nothing uploaded. 凝胶电泳作图工具
talharaziq / Advanced-Bioinformatics
A free, hands-on bioinformatics roadmap from Linux, Python & R to RNA-seq, genomics, Bioconductor, and advanced transcriptomics. Curated English tutorials, YouTube playlists, practical exercises, and research tools.
duerrsimon / bioicons
A library of free open source icons for science illustrations in biology and chemistry
omicverse / omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
biopython / biopython
Official git repository for Biopython (originally converted from CVS)
xuzhougeng / wisp-science
Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.
studioigor / 3d-animator-skill
—
MikeMirzayanov / testlib
C++ library to develop competitive programming problems
OpenChemistry / avogadrolibs
Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
genomoncology / biomcp
BioMCP: Biomedical Model Context Protocol
seandavi / awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
OpenGene / fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
soedinglab / MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
ClawBio / ClawBio
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
beita6969 / ScienceClaw
Verifiable program-level self-evolution for AI-for-Science agents: Skills and typed Operators grow from replay-verified executions.
plotly / dash
Data Apps & Dashboards for Python. No JavaScript Required.
sokrypton / ColabFold
Making Protein folding accessible to all!
galaxyproject / galaxy
Data intensive science for everyone.
oschwengers / bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
opencobra / cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
mehek-builds / Entry-Level-Computational-Biology-Bioinformatics-Jobs
Title-screened computational biology, bioinformatics, biostatistics and biotech data science leads for early-career searches. Dated employer-board snapshots maintained by Litos.
google / deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
nextflow-io / nextflow
A workflow language for data-driven computational pipelines
broadinstitute / gatk
Official code repository for GATK versions 4 and up
schreibfaul1 / ESP32-audioI2S
Play mp3 files from SD via I2S
scikit-bio / scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
a-r-j / graphein
Protein Graph Library
COMBINE-lab / salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
JkingYu / DiffExplorer
Differential analysis tool for coding-free researchers – instant statistical results and charts, ready for your lab meeting. Just unzip and run! No-coding!
studioigor / studioigor-skill
—
rust-bio / rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
qupath / qupath
QuPath - Open-source bioimage analysis for research
sib-swiss / training-collection
Collection of bioinformatics training materials
tanghaibao / jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
bacalhau-project / bacalhau
Community-driven, simple, yet powerful framework for fast, cost-effective distributed Compute over Data.
BenLangmead / bowtie2
A fast and sensitive gapped read aligner
deeptools / deepTools
Tools to process and analyze deep sequencing data.
computational-cell-analytics / micro-sam
Segment Anything for Microscopy
gamcil / clinker
Gene cluster comparison figure generator
Ecogenomics / GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
nf-core / sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
cdk / cdk
The Chemistry Development Kit
andrewgioia / keyrune
Magic: the Gathering set symbol pictographic font
wrab12 / awesome-spatial-transcriptomics
A curated list of tools, foundation models, datasets and tutorials for spatial transcriptomics and single-cell analysis, ordered the way an analysis goes.
K-Dense-AI / drug-discovery-agent-skills
Agent Skills for small-molecule and protein therapeutics: cheminformatics, molecular ML, docking and dynamics, protein design platforms, and target-discovery knowledge graphs.
ckmah / milume
Milume: explore spatial biology in your notebook. Layer images, cells, and transcripts in 3D, in one reactive widget.
bioconda / bioconda-recipes
Conda recipes for the bioconda channel.