K-Dense-AI / scientific-agent-skills
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 250,000+ scientists worldwide. 177 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
ssinder / bioinformatics-agent-skills
Agent Skills for computational biology — RNA-seq, single-cell, protein structure, molecular dynamics, peptide design, literature mining and publication figures. Turn any AI coding agent into a computational biology assistant.
studioigor / ref2game
Turns a single reference image into a playable 2D browser game prototype, with AI-generated art and code-driven animation.
mampfes / hacs_waste_collection_schedule
Home Assistant integration framework for (garbage collection) schedules
scverse / scanpy
Single-cell analysis in Python. Scales to >100M cells.
omicverse / omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
biopython / biopython
Official git repository for Biopython (originally converted from CVS)
studioigor / 3d-animator-skill
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ClawBio / ClawBio
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
plotly / dash
Data Apps & Dashboards for Python. No JavaScript Required.
galaxyproject / galaxy
Data intensive science for everyone.
oschwengers / bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
opencobra / cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
mehek-builds / Entry-Level-Computational-Biology-Bioinformatics-Jobs
Title-screened computational biology, bioinformatics, biostatistics and biotech data science leads for early-career searches. Dated employer-board snapshots maintained by Litos.
google / deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
scikit-bio / scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
JkingYu / DiffExplorer
Differential analysis tool for coding-free researchers – instant statistical results and charts, ready for your lab meeting. Just unzip and run! No-coding!
studioigor / studioigor-skill
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sib-swiss / training-collection
Collection of bioinformatics training materials
tanghaibao / jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
deeptools / deepTools
Tools to process and analyze deep sequencing data.
gamcil / clinker
Gene cluster comparison figure generator
Ecogenomics / GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
K-Dense-AI / drug-discovery-agent-skills
Agent Skills for small-molecule and protein therapeutics: cheminformatics, molecular ML, docking and dynamics, protein design platforms, and target-discovery knowledge graphs.
hail-is / hail
Cloud-native genomic dataframes and batch computing
tanghaibao / goatools
Python library to handle Gene Ontology (GO) terms
danforthcenter / plantcv
Plant phenotyping with image analysis
scverse / anndata
Annotated data.
scverse / PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
fritzsedlazeck / Sniffles
Structural variation caller using third generation sequencing
marcelm / cutadapt
Cutadapt removes adapter sequences from sequencing reads
sourmash-bio / sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets.
merenlab / anvio
An analysis and visualization platform for 'omics data
HERRY423 / BioNexus
Scientific reliability layer for AI-assisted biology: evaluates what evidence warrants, caps unsupported claims, audits analytical validity, and prevents silent scientific overreach.
biotite-dev / biotite
A comprehensive library for computational molecular biology
BioPandas / biopandas
Working with molecular structures in pandas DataFrames
cafferychen777 / mLLMCelltype
Cell type annotation for single-cell RNA-seq using multi-LLM consensus
gugarosa / opytimizer
🐦 Opytimizer is a Python library consisting of meta-heuristic optimization algorithms.
oncologylab / fp-tools
Command-first ATAC-seq footprinting, motif analysis, and reproducible interactive reports
NingyuSUN / bioai-evidence-validator
Evidence validation and policy engine for AI-assisted biological curation
Dong-Fang-Bu-Bai / btr-dualrag
Source code for BTR-dualRAG: Bioinformatics Tool Recommendation With Dual Retrieval-Augmented Generation
dportik / Biotech-Job-Search-Engine
A configurable, open-source job-discovery system for biotech, genomics, computational biology, bioinformatics, and adjacent life-science roles.
sagirimo / BioDSH
The bioinformatics agent desktop for clinicians and wet-lab scientists — built on DeepSeek Harness. One-click installers, a skill store, offline mode.
S0mbraD / OpenTCM_Discovery
面向中药小分子发现的开源研究工具。检索疾病通路和成分，核对多个公开数据库是否同时收录，并只在文献写明结合口袋时做分子对接。计算结果用来提出可检验的假设。
studioimaginaire / phue
A Python library for the Philips Hue system
QD-academia / PostEx
Evidence-linked Palette Fusion for distinctive, editable, and print-ready academic posters.