K-Dense-AI / scientific-agent-skills

A collection of 177 validated scientific skills for AI agents, covering biology, chemistry, medicine, and data analysis, plus 100+ scientific database references.

Clearailhc / clearai-dsh

ClearAI：以本体为纲的原生 DSH 插件 —— 经证据核验的研究长成可浏览的领域本体。 · ClearAI: an ontology-first DSH agent preset — evidence-checked research that grows into a domain ontology.

ai4s-research / open-science

Open Science Desktop — local-first, model-agnostic AI research workbench for macOS, Windows & Linux. Open-source Claude Science desktop alternative built on Tauri + MCP + agent skills.

synthetic-sciences / openscience

The open-source AI workbench for scientific research

ChenLiu-1996 / figures4papers

My Python scripts to make high-quality figures for publications in top AI conferences and journals.

aipoch / open-science

The open-source AI research workbench for scientific research and agent workflows. Local-first, model-agnostic desktop app with extensible skills, MCP tools and connectors, Python/R execution and traceable artifacts for reproducible research on macOS, Windows and Linux.

PDFMathTranslate / PDFMathTranslate

[EMNLP 2025 Demo] PDF scientific paper translation with preserved formats - 基于 AI 完整保留排版的 PDF 文档全文双语翻译，支持 Google/DeepL/Ollama/OpenAI 等服务，提供 CLI/GUI/MCP/Docker/Zotero

SakanaAI / AI-Scientist

Open-source system where LLMs autonomously generate research ideas, run experiments, and write full scientific papers.

qwdwqfwq / topconf-paper-figure-gallery

3,516 curated Figure 1 / teasers from ICLR, ICML, NeurIPS, CVPR, ACL, AAAI (2023-2026), with tier badges and FigureForge retrieval-augmented figure drafting

lgwrightlab / schematic-figure

Skill for AI agents that draws publication-quality scientific schematic figures as vector code

numpy / numpy

The fundamental package for scientific computing with Python.

billion-token-one-task / Deepgraph

Token-scale scientific discovery engine — autonomous hypothesis generation, experiment execution, and knowledge graph synthesis

JuliaLang / julia

The Julia Programming Language

SakanaAI / AI-Scientist-v3

The Agentic Scientist: Orchestrating Coding Agents for Automated Scientific (Co-)Discovery

evoscm / EvoSCM

EvoSCM: Scientific Belief Revision Through Causal Model Evolution and Experimentation

matlab / matlab-agentic-toolkit

The MATLAB Agentic Toolkit brings proven MATLAB capabilities to AI agents, making engineering and scientific workflows agent-ready.

tracel-ai / burn

Burn is a next generation tensor library and Deep Learning Framework that doesn't compromise on flexibility, efficiency and portability.

google-deepmind / science-skills

GDM Science Skills to speed up agentic scientific workflows with better grounding and higher token efficiency. Integrate insights from AlphaGenome, AFDB, UniProt and 30+ other databases and tools.

scipy / scipy

SciPy library main repository

K-Dense-AI / claude-scientific-writer

A general purpose scientific writer

icebird1998 / scientific-illustrator

Editable scientific figures in PowerPoint and draw.io via Codex/MCP with Designer-Drawer-Reviewer-Corrector quality gates.

PKU-YuanGroup / OpenAI4S

Open-source AI agent for scientific research. Analyze data in Python/R with Claude, GPT, Gemini, and more.

VILA-Lab / FigMirror

An Automated AI Agent Tool for Plotting Your Data in Any Paper's Figure Style.

JiahongXu88 / PaperTeam

Evidence-grounded scientific agent system for research automation, citation verification and paper production.

wxyhgk / retain-pdf

在保留版面、公式与结构的前提下进行 PDF 翻译，适用于科研与技术文档

casadi / casadi

CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python, Matlab/Octave, Julia or Javascript

birdnet-team / BirdNET-Analyzer

BirdNET analyzer for scientific audio data processing.

K-Dense-AI / k-dense-byok

An AI co-scientist running on your desktop. Claude Science but better.

Human-Agent-Society / CORAL

Open-source autoresearch powered by autonomous coding agents. Run Claude Code, OpenCode, and Codex with grading, shared knowledge, and multi-agent evolution. Accepted at COLM 2026.

hang-jin / editaplot

AI-guided editable scientific figures with Codex and local Origin/OriginPro

OpenChemistry / avogadrolibs

Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.

Boom5426 / Nature-Paper-Skills

An AI-powered Scientific Writing Workflow: Agent skills for drafting, revising, auditing, and resubmitting Nature-style journal manuscripts.

Gen-Verse / ScienceBuddy

ScienceBuddy: Recursive-in-Recursive Self-Improvement for Interactive Scientific Agents

junjiezhou1122 / ideascientist-claude-code

Native Claude Code, Codex and Pi adaptations of IdeaScientist for automatic, evidence-grounded research ideation.

Future-House / paper-qa

High accuracy RAG for answering questions from scientific documents with citations

quarto-dev / quarto-cli

Open-source scientific and technical publishing system built on Pandoc.

ProjectPhysX / FluidX3D

The fastest and most memory efficient lattice Boltzmann CFD software, running on all GPUs and CPUs via OpenCL. Free for non-commercial use.

root-project / root

The official repository for ROOT: analyzing, storing and visualizing big data, scientifically

webfuse-com / awesome-autoresearch

A curated list of autonomous improvement loops, research agents, and autoresearch-style systems inspired by Karpathy's autoresearch.

deepcharles / ruptures

ruptures: change point detection in Python

WenjieDu / PyPOTS

A Python toolkit/library for reality-centric machine/deep learning & data mining on partially-observed time series, with 50+ SOTA neural network models for scientific analysis tasks (imputation, classification, clustering, forecasting, anomaly detection, cleaning) on incomplete industrial irregularly-sampled multivariate TS with NaN missing values

ai4s-research / awesome-ai-for-science

A curated list of awesome AI tools, libraries, papers, datasets, and frameworks that accelerate scientific discovery — from physics and chemistry to biology, materials, and beyond.

shadow / shadow

Shadow is a discrete-event network simulator that directly executes real application code, enabling you to simulate distributed systems with thousands of network-connected processes in realistic and scalable private network experiments using your laptop, desktop, or server running Linux.

InsightSoftwareConsortium / ITK

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

brayonpi / hexstellar

Turn any AI agent into a computational researcher. HexStellar Cortex delivers software-accelerated optimization, quantum computing, scientific computing, decision intelligence, and verifiable execution through a Python CLI and API—with certainty labels, verification receipts, examples, and a free sandbox. Start instantly: pip install hexstellar

smartcorelib / smartcore

A comprehensive library for machine learning and numerical computing. Apply Machine Learning with Rust leveraging first principles.

JuDFTteam / best-of-atomistic-machine-learning

🏆 A ranked list of awesome atomistic machine learning projects ⚛️🧬💎.

SciML / OrdinaryDiffEq.jl

High performance ordinary differential equation (ODE) and differential-algebraic equation (DAE) solvers, including neural ordinary differential equations (neural ODEs) and scientific machine learning (SciML)

easybuilders / easybuild

EasyBuild - building software with ease

Tavotto / Tavotto

Make AI-generated scientific figures editable without losing the code behind them.

BootLoops-ai / bootloops

BootLoops 1.0: certified computational tools and house engines for exact and high-precision physics and quantitative science, built to be driven by LLM agents. MIT; docs CC BY 4.0.

exsinger-hub / Sivia

Scientific illustration for Codex and Claude Code: turn research papers into visual drafts using a curated image-and-prompt knowledge base, then reconstruct approved designs as editable PowerPoint or draw.io figures.

Omni-Scientist / Awesome-AI-Scientist

🧪 Awesome list of AI Scientist papers, systems, benchmarks, datasets and open-source platforms.

amos689 / paperdelta

Trace changed experiment results to the numbers, claims and figures in your LaTeX paper. Offline bilingual review, safe numeric patches and read-only MCP tools.

liushunqi8-hash / editaplot2026

EditaPlot — editable Origin/OriginPro scientific plotting skill, with Origin 2026 (10.30) compatibility fixes.

PDFMathTranslate / PDFMathReader

Read scientific documents in your language, in realtime, on any platform. 在任何平台上用您的语言实时翻译和阅读科学文献。

jiang-zl / lotraAI-image2slide-skill

A Codex skill for reconstructing scientific figures as layered, editable PowerPoint slides.

goplus / xgo

XGo is a programming language that reads like plain English. But it's also incredibly powerful — it lets you leverage assets from C/C++, Go, Python, and JavaScript/TypeScript, creating a unified software engineering ecosystem. Our vision is to enable everyone to become a builder of the world.

spyder-ide / spyder

Official repository for Spyder - The Scientific Python Development Environment

gonum / gonum

Gonum is a set of numeric libraries for the Go programming language. It contains libraries for matrices, statistics, optimization, and more