biopython / biopython
Official git repository for Biopython (originally converted from CVS)
biopython / biopython
HannesStark / boltzgen
BoltzGen: Toward Universal Binder Design
microsoft / bioemu
Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning
PacesaLab / BindCraft2
Easy to use suite for designing a wide range of protein binder modalities.
sokrypton / ColabFold
Making Protein folding accessible to all!
BradyAJohnston / MolecularNodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
martinpacesa / BindCraft
User friendly and accurate binder design pipeline
a-r-j / graphein
Protein Graph Library
sokrypton / ColabDesign
Making Protein Design accessible to all via Google Colab!
generatebio / chroma
A generative model for programmable protein design
BioPandas / biopandas
Working with molecular structures in pandas DataFrames
biojava / biojava
:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.
soedinglab / hh-suite
Remote protein homology detection suite.
prody / ProDy
A Python Package for Protein Dynamics Analysis
chemosim-lab / ProLIF
Interaction Fingerprints for protein-ligand complexes and more
google-deepmind / alphaprotein-novo
AlphaProtein Novo
GENTEL-lab / Fold2Reason
Official code for Fold2Reason: Enhancing general reasoning in language models through protein-structure post-training.
NVIDIA-BioNeMo / BioNeMo-Inference-Runtime
Easy, fast, and memory-efficient structure prediction inference
ZekunCheng / novoweave
NovoWeave — a conceptual generative protein-design framework (non-functional pseudocode).
K-Dense-AI / drug-discovery-agent-skills
Agent Skills for small-molecule and protein therapeutics: cheminformatics, molecular ML, docking and dynamics, protein design platforms, and target-discovery knowledge graphs.
wejulius / Bindome
Towards a protein binder candidate for every protein
yacine-baghli / DYB-Pro
DYB Pro hands the protein design pipeline to Devin: state a goal, add sequences, and an autonomous in-silico cycle returns a ranked, order-ready wet-lab shortlist at a fraction of the cost. Devin orchestrates specialist agents whose results commit to a version graph the next cycle reads.
RosettaCommons / RFD4-Proteina
Generative protein design with rich conditioning.