nextflow-io / nextflow

A workflow language for data-driven computational pipelines

nf-core / rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

datavzrd / datavzrd

A tool to create visual HTML reports from collections of CSV/TSV tables

nf-core / sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing