OpenImagingLab / FlashVSR_Plus
This is the official repo of FlashVSR+: Efficient Video Super-Resolution via Hybrid Attention and Reward-Yield Distribution Matching.
OpenImagingLab / FlashVSR_Plus
BlurLabsAI / blurlabs
Blur Labs foundation models for imaging
python-pillow / Pillow
Python Imaging Library (fork)
alicevision / Meshroom
Node-based Visual Programming Toolbox
Project-MONAI / MONAI
AI Toolkit for Healthcare Imaging
achael / eht-imaging
Imaging, analysis, and simulation software for radio interferometry
OHIF / Viewers
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
mne-tools / mne-python
MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
Slicer / Slicer
Multi-platform, free open source software for visualization and image computing.
TorchIO-project / torchio
Medical imaging processing for AI applications.
OpenImagingLab / FlashVSR
[CVPR 2026] Towards Real-Time Diffusion-Based Streaming Video Super-Resolution — An efficient one-step diffusion framework for streaming VSR with locality-constrained sparse attention and a tiny conditional decoder.
ivmartel / dwv
DICOM Web Viewer: open source zero footprint medical image library.
InsightSoftwareConsortium / ITK
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
ANTsX / ANTs
Advanced Normalization Tools (ANTs)
qupath / qupath
QuPath - Open-source bioimage analysis for research
nilearn / nilearn
Machine learning for NeuroImaging in Python
nroduit / Weasis
Weasis is a web-based DICOM viewer for advanced medical imaging and seamless PACS integration.
braindecode / braindecode
Deep learning software to decode EEG, ECG or MEG signals
JunMa11 / MICCAI-OpenSourcePapers
MICCAI 2019-2026 Open Source Papers
fo-dicom / fo-dicom
Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity
mlmed / torchxrayvision
TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
rordenlab / dcm2niix
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
cornerstonejs / cornerstone3D
Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.
fieldtrip / fieldtrip
The MATLAB toolbox for MEG, EEG and iEEG analysis
commontk / CTK
A set of common support code for medical imaging, surgical navigation, and related purposes.
adalca / medical-datasets
tracking medical datasets, with a focus on medical imaging
Project-MONAI / MONAILabel
MONAI Label is an intelligent open source image labeling and learning tool.
ANTsX / ANTsPy
A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.
freesurfer / freesurfer
Neuroimaging analysis and visualization suite
dipy / dipy
DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
MITK / MITK
The Medical Imaging Interaction Toolkit.
nipy / nipype
Workflows and interfaces for neuroimaging packages
deepinv / deepinv
DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning
invesalius / invesalius3
3D medical imaging reconstruction software
nipy / nibabel
Python package to access a cacophony of neuro-imaging file formats
cloudbase / windows-imaging-tools
Tools to automate the creation of a Windows image for OpenStack, supporting KVM, Hyper-V, ESXi and more.
oncologylab / histopia
Histology Spatial Topology for Omics Profiling and Inter-section Alignment
nipreps / fmriprep
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
vccimaging / DeepLens
Differentiable optical lens simulator for end-to-end computational imaging.
flatironinstitute / CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
saucecontrol / PhotoSauce
MagicScaler high-performance, high-quality image processing pipeline for .NET
devitocodes / devito
DSL and compiler framework for automated finite-differences and stencil computation
cgohlke / tifffile
Read and write TIFF files.
aaryansamanta / ai-research-publications
High-school research portfolio: 2 peer-reviewed publications (IEEE, IJHSR) + 3 active projects spanning quantum-inspired ML, computational biology, biomedical imaging, wildfire RL, and science-education research. Stanford Medicine, UCLA COSMOS & UCSB SRA affiliated.
gallantlab / pycortex
Pycortex is a python-based toolkit for surface visualization of fMRI data
MIC-DKFZ / nnDetection
nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.
acoular / acoular
Acoustic testing and source mapping software
albumentations-team / AlbumentationsX
Image augmentation for computer vision. AGPL-3.0-only or commercial licensing.
Enet4 / dicom-rs
Rust implementation of the DICOM standard
TissueImageAnalytics / tiatoolbox
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
FAST-Imaging / FAST
A framework for high-performance medical image processing, neural network inference and visualization
openslide / openslide
C library for reading virtual slide images
microsoft / dicom-server
OSS Implementation of DICOMweb standard
l5769389 / voxenra
Cross-platform DICOM viewer for CT, MRI & PET/CT with MPR, 3D, fusion, editable segmentation and local AI auto-segmentation via TotalSegmentator.
ruoyuw22-byte / NeuroMorph-Assessment
An automated structural MRI morphometry system integrating CAT12 processing, brain tissue quantification, visualization, and automated report generation.
VictorButoi / FleXray
FleXray: Universal Clinical X-ray Segmentation
mahmoodlab / CORAL
Spatial biology processing suite
a-r-d / PureJsImage
Low-memory, zero-dependency image codecs and processing in pure TypeScript for Node.js, browsers, and serverless runtimes. Bounded decode/resize pipelines plus deep TIFF, scientific raster, GeoTIFF, OME-TIFF, and whole-slide support.
KeWang0622 / MRFoundry
MRI research guidance for coding agents — composable skills, established tools, and evidence-linked research memory. Install: npx skills add KeWang0622/MRFoundry
AndreiiArhire / LightMIS
LightMIS: Ultra-Lightweight Medical Image Segmentation Without a Stage-Wise Decoder