OpenGene / fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

shenwei356 / seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

torognes / vsearch

Versatile open-source tool for microbiome analysis

s-andrews / FastQC

A quality control analysis tool for high throughput sequencing data