K-Dense-AI / scientific-agent-skills
A collection of 177 validated scientific skills for AI agents, covering biology, chemistry, medicine, and data analysis, plus 100+ scientific database references.
K-Dense-AI / scientific-agent-skills
RosettaCommons / chaperone
A unified framework for making structural biology tools interoperable.
mehek-builds / Entry-Level-Computational-Biology-Bioinformatics-Jobs
Title-screened computational biology, bioinformatics, biostatistics and biotech data science leads for early-career searches. Dated employer-board snapshots maintained by Litos.
biologyscience / ps5-exe-toolkit
A simple GUI wrapper to automate the conversion of extracted PS5 pkg files to a native windows executable using Relinker from AnyPS5
Garinmckayl / anima
Anima: a Claude Code skill that turns a biology idea into an interactive, sourced, isometric figure. Dopamine receptors, stimulants, addiction circuits, semaglutide.
Developer-Y / cs-video-courses
List of Computer Science courses with video lectures.
openworm / OpenWorm
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
ai4s-research / awesome-ai-for-science
A curated list of awesome AI tools, libraries, papers, datasets, and frameworks that accelerate scientific discovery β from physics and chemistry to biology, materials, and beyond.
HannesStark / boltzgen
BoltzGen: Toward Universal Binder Design
opencobra / cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
Revolutionary-Games / Thrive
The main repository for the development of the evolution game Thrive.
duerrsimon / bioicons
A library of free open source icons for science illustrations in biology and chemistry
BradyAJohnston / MolecularNodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
thieu1995 / mealpy
A Collection Of The State-of-the-art Metaheuristic Algorithms In Python (Metaheuristic/Optimizer/Nature-inspired/Biology)
scikit-bio / scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
a-r-j / graphein
Protein Graph Library
opensim-org / opensim-core
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
biotite-dev / biotite
A comprehensive library for computational molecular biology
vandijklab / cell2sentence
Cell2Sentence: Teaching Large Language Models the Language of Biology
kyegomez / Open-AF3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
BioPandas / biopandas
Working with molecular structures in pandas DataFrames
aaryansamanta / ai-research-publications
High-school research portfolio: 2 peer-reviewed publications (IEEE, IJHSR) + 3 active projects spanning quantum-inspired ML, computational biology, biomedical imaging, wildfire RL, and science-education research. Stanford Medicine, UCLA COSMOS & UCSB SRA affiliated.
cafferychen777 / mLLMCelltype
Cell type annotation for single-cell RNA-seq using multi-LLM consensus
3dem / relion
Image-processing software for cryo-electron microscopy
SciML / Catalyst.jl
Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
Opentrons / opentrons
Software for writing protocols and running them on the Opentrons Flex and Opentrons OT-2
styczynski / bioseqdb
Genomic sequence storage, indexing and alignment inside PostgreSQL: https://bioseqdb.com/
dportik / Biotech-Job-Search-Engine
A configurable, open-source job-discovery system for biotech, genomics, computational biology, bioinformatics, and adjacent life-science roles.
mahmoodlab / CORAL
Spatial biology processing suite
astrnox / TATAbox
Your Complete Biology Study Companion β From Gaokao to Competition Level;ι«δΈηηη©ε¦δΉ εΉ³ε°-ι«θε°η«θ΅ε ¨ιΎθ·―ε¦δΉ ζΉζ‘
Tyche-MKR / scientific-agent-skills
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 190,000+ scientists worldwide. 165 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
ZekunCheng / novoweave
NovoWeave β a conceptual generative protein-design framework (non-functional pseudocode).
wrab12 / awesome-spatial-transcriptomics
A curated list of tools, foundation models, datasets and tutorials for spatial transcriptomics and single-cell analysis, ordered the way an analysis goes.
K-Dense-AI / drug-discovery-agent-skills
Agent Skills for small-molecule and protein therapeutics: cheminformatics, molecular ML, docking and dynamics, protein design platforms, and target-discovery knowledge graphs.
sammargolis / DrugTargetWorld
DrugTargetWorld: a synthetic biobank for training and benchmarking AI scientists on end-to-end drug target discovery. Paper: arXiv:2610.09558
HERRY423 / BioNexus
Scientific reliability layer for AI-assisted biology: evaluates what evidence warrants, caps unsupported claims, audits analytical validity, and prevents silent scientific overreach.
iamtechartist / human-cell-visualizer
An experiment in Three.js combining biology, particles, morphing animation with info panels and annotated anatomy.
windmirrorai / nanomirrors
State-of-the-art bio cell models for inference and training. Minimal, readable, and produciton-ready.
uruskan / EliteNexus
All-in-one Elite Dangerous companion app: one fast native Windows exe that replaces EDDiscovery, EDMC, Observatory, Odyssey Materials Helper and your Inara/Spansh tabs. Exobiology, exploration, live EDDN trading, Spansh routes, engineering, fleet, carrier, an AI co-pilot, and most advanced HUD Color change, light dimming control etc.
3dmol / 3Dmol.js
WebGL accelerated JavaScript molecular graphics library