nipreps / fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

fieldtrip / fieldtrip

The MATLAB toolbox for MEG, EEG and iEEG analysis

rordenlab / dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC