97YearsOldProgrammer / flashalign

A fast aligner for long DNA and RNA reads.

MontrealCorpusTools / Montreal-Forced-Aligner

Command line utility for forced alignment using Kaldi

Babyhamsta / Aimmy

Universal Second Eye for Gamers with Impairments (Universal AI Aim Aligner (AI Aimbot) - ONNX/YOLOv8 - C#)

bbuchfink / diamond

Accelerated BLAST compatible local sequence aligner.

BenLangmead / bowtie2

A fast and sensitive gapped read aligner

ComparativeGenomicsToolkit / cactus

Official home of genome aligner based upon notion of Cactus graphs

nyrahealth / nyra-forced-aligner

Word and phoneme level speech timing for spontanoues speech. Fast, accurate and robust.

olewave / fa-bench

Phone and word timestamp accuracy on human-labeled TIMIT and Buckeye, clean and under reverb, noise, music and babble. Two tracks, forced aligners given the transcript and ASR systems that find their own words. MFA, WhisperX, Charsiu, Qwen3, Parakeet-TDT, Olign and more. Monthly leaderboards, paper on arXiv.