K-Dense-AI / scientific-agent-skills
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 250,000+ scientists worldwide. 177 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
biopython / biopython
Official git repository for Biopython (originally converted from CVS)
google / deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
materialsproject / pymatgen
Python Materials Genomics (pymatgen) is a robust materials analysis code that defines classes for structures and molecules with support for many electronic structure codes. It powers the Materials Project.
galaxyproject / galaxy
Data intensive science for everyone.
scverse / scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data
thetahealth / mirobody
Turn scattered health data into answers you can trace. Self-hosted AI health data engine for lab reports, wearables and genetics, with a built-in MCP server. Run it with Docker and one LLM key, or keep every model local on llama.cpp.
scikit-bio / scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
scverse / gget
🧬 gget enables efficient querying of genomic reference databases
ClawBio / ClawBio
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
hail-is / hail
Cloud-native genomic dataframes and batch computing
tanghaibao / goatools
Python library to handle Gene Ontology (GO) terms
deeptools / deepTools
Tools to process and analyze deep sequencing data.
ComparativeGenomicsToolkit / cactus
Official home of genome aligner based upon notion of Cactus graphs
oschwengers / bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Ecogenomics / GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
scverse / squidpy
Spatial Single Cell Analysis in Python
oncologylab / fp-tools
Command-first ATAC-seq footprinting, motif analysis, and reproducible interactive reports
merenlab / anvio
An analysis and visualization platform for 'omics data
dportik / Biotech-Job-Search-Engine
A configurable, open-source job-discovery system for biotech, genomics, computational biology, bioinformatics, and adjacent life-science roles.