broadinstitute / gatk

Official code repository for GATK versions 4 and up

qupath / qupath

QuPath - Open-source bioimage analysis for research

cdk / cdk

The Chemistry Development Kit

biojava / biojava

:book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

lindenb / jvarkit

Java utilities for Bioinformatics