vgteam / vg

tools for working with genome variation graphs

BenLangmead / bowtie2

A fast and sensitive gapped read aligner

torognes / vsearch

Versatile open-source tool for microbiome analysis

vcflib / vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

dellytools / delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis