satijalab / seurat
git clone https://github.com/satijalab/seurat.git
v5.6.0 · 17d ago
🔥 on GitHub Trending today
R toolkit for single cell genomics
+0
stars, 24h · #670
+3
stars, 7 days · #1,621
+11
stars, 30 days · #10,000
2.8k
★ total · +0% this week
1.0k
forks · 223 open issues
Star history starts 2026-10-20; the chart appears after the second daily snapshot.
LanguageR
License—
Created2015-05-20 (11y ago)
Last pushtoday
Watchers73
OwnerOrganization
Seen on GitHub Trending
- 2026-10-20 — #2 daily in r
- 2026-10-20 — #9 monthly in r · +11 ★
- 2026-10-20 — #1 weekly in r · +3 ★
GitHub topics
Links
- GitHub: github.com/satijalab/seurat
- Homepage: http://www.satijalab.org/seurat
- Releases · Issues · Hacker News mentions
README excerpt
# Seurat v5 Seurat is an R toolkit for single-cell genomics, developed and maintained by the Satija Lab at NYGC. > We are excited to release Seurat v5! This update introduces new functionality for spatial, multimodal, and scalable single-cell analysis. > > Seurat v5 is backwards-compatible with previous versions, so that users will continue to be able to re-run existing workflows. Installation instructions, documentation, and tutorials can be found at: * https://satijalab.org/seurat Seurat can be successfully installed in R on any system (Mac OS X, Linux, Windows). Improvements and new features are added on a regular basis. For the most up-to-date development version, refer to the `main` branch. For the most recent version released on CRAN, refer to the `cran` branch. Please post under Issues with any bug reports, feature requests, etc., and use Discussions to engage with the wider Seurat community on analysis questions and other topics. PRs are welcome if you would like to contribute. For a version history/changelog, please see the NEWS file.