google / deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

google-deepmind / science-skills

GDM Science Skills to speed up agentic scientific workflows with better grounding and higher token efficiency. Integrate insights from AlphaGenome, AFDB, UniProt and 30+ other databases and tools.

google-deepmind / alphagenome

This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.

google-deepmind / alphagenome_research

Research code accompanying AlphaGenome

deeptools / pyGenomeTracks

python module to plot beautiful and highly customizable genome browser tracks

ComparativeGenomicsToolkit / cactus

Official home of genome aligner based upon notion of Cactus graphs

oschwengers / bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

mdozmorov / HiC_tools

A collection of tools for Hi-C data analysis

Ecogenomics / GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

malonge / RagTag

Tools for fast and flexible genome assembly scaffolding and improvement

dahan6 / whetstones-lab

Whetstones Lab: measuring coevolution between adaptive malware and behavioral defense. De-weaponized research release — genomes, evolution rounds, telemetry, training harness (stubbed primitives), and lab range tooling. Payloads, real primitives, and C2 infrastructure intentionally withheld. Research and defensive use only.