astroautomata / PySR

Symbolic Learning in Python and Julia

algorithmicsuperintelligence / openevolve

Open-source implementation of AlphaEvolve

stephenlinyu / hilly-farm-scheduler

Hilly farm machinery scheduling system: Flask + genetic algorithm + JT/T 808 + Leaflet

Optima-CityU / LLM4AD_Next

A next-generation automatic algorithm design platform, making automated algorithm design more accessible and easier to use

thetahealth / mirobody

Mirror your body in data. One standard, every source, one complete picture of you: a self-hosted health record built from lab reports, wearables and genetics, with every number traced to its source and a built-in MCP server. Run it with Docker and one LLM key, or keep every model local on llama.cpp.

biopython / biopython

Official git repository for Biopython (originally converted from CVS)

tanghaibao / jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

ClawBio / ClawBio

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.

thieu1995 / mealpy

A Collection Of The State-of-the-art Metaheuristic Algorithms In Python (Metaheuristic/Optimizer/Nature-inspired/Biology)

scikit-bio / scikit-bio

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

google / deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Ecogenomics / GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

commonLuke / mario-neural-network

a neural network + genetic algorithm learns to play mario

ahmedfgad / GeneticAlgorithmPython

Source code of PyGAD, a Python 3 library for building the genetic algorithm and training machine learning algorithms (Keras & PyTorch).

hail-is / hail

Cloud-native genomic dataframes and batch computing

aimclub / FEDOT

Automated modeling and machine learning framework FEDOT

merenlab / anvio

An analysis and visualization platform for 'omics data

Project-Platypus / Platypus

A Free and Open Source Python Library for Multiobjective Optimization

i3T4AN / KADATH

Evolutionary multi-agent runtime that breeds, evaluates, and improves autonomous agents across reproducible epochs to converge on optimization of a goal.

nemanja-m / gaps

A Genetic Algorithm-Based Solver for Jigsaw Puzzles :cyclone: