K-Dense-AI / scientific-agent-skills
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 250,000+ scientists worldwide. 177 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
Dong-Fang-Bu-Bai / btr-dualrag
Source code for BTR-dualRAG: Bioinformatics Tool Recommendation With Dual Retrieval-Augmented Generation
plotly / dash
Data Apps & Dashboards for Python. No JavaScript Required.
biopython / biopython
Official git repository for Biopython (originally converted from CVS)
google / deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
scverse / scanpy
Single-cell analysis in Python. Scales to >100M cells.
galaxyproject / galaxy
Data intensive science for everyone.
omicverse / omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
scikit-bio / scikit-bio
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
ClawBio / ClawBio
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
sib-swiss / training-collection
Collection of bioinformatics training materials
hail-is / hail
Cloud-native genomic dataframes and batch computing
biotite-dev / biotite
A comprehensive library for computational molecular biology
danforthcenter / plantcv
Plant phenotyping with image analysis
scverse / anndata
Annotated data.
deeptools / deepTools
Tools to process and analyze deep sequencing data.
scverse / PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
BioPandas / biopandas
Working with molecular structures in pandas DataFrames
oschwengers / bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
fritzsedlazeck / Sniffles
Structural variation caller using third generation sequencing
cafferychen777 / mLLMCelltype
Cell type annotation for single-cell RNA-seq using multi-LLM consensus
gamcil / clinker
Gene cluster comparison figure generator
Ecogenomics / GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
opencobra / cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
marcelm / cutadapt
Cutadapt removes adapter sequences from sequencing reads
oncologylab / fp-tools
Command-first ATAC-seq footprinting, motif analysis, and reproducible interactive reports
sourmash-bio / sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets.
merenlab / anvio
An analysis and visualization platform for 'omics data
QD-academia / PostEx
Evidence-linked Palette Fusion for distinctive, editable, and print-ready academic posters.
NingyuSUN / bioai-evidence-validator
Evidence validation and policy engine for AI-assisted biological curation
JkingYu / DiffExplorer
Differential analysis tool for coding-free researchers – instant statistical results and charts, ready for your lab meeting. Just unzip and run! No-coding!
dportik / Biotech-Job-Search-Engine
A configurable, open-source job-discovery system for biotech, genomics, computational biology, bioinformatics, and adjacent life-science roles.
sagirimo / BioDSH
The bioinformatics agent desktop for clinicians and wet-lab scientists — built on DeepSeek Harness. One-click installers, a skill store, offline mode.
K-Dense-AI / drug-discovery-agent-skills
Agent Skills for small-molecule and protein therapeutics: cheminformatics, molecular ML, docking and dynamics, protein design platforms, and target-discovery knowledge graphs.
HERRY423 / BioNexus
Scientific reliability layer for AI-assisted biology: evaluates what evidence warrants, caps unsupported claims, audits analytical validity, and prevents silent scientific overreach.